Cryptographic vulnerability scanners identify quantum-unsafe algorithms but leave remediation to manual engineering effort, creating a gap between detection and resolution that delays post-quantum migration. We present an automated remediation pipeline for QCrypton that closes this gap through five specialized endpoints: (1) code remediation that scans project source code, identifies quantum-vulnerable cryptographic calls, and generates algorithm-specific patches with dry-run support; (2) server configuration hardening that analyzes TLS, cipher suite, and protocol settings and applies quantum-safe fixes; (3) input sanitization with risk scoring that detects and removes injection patterns while quantifying risk reduction; (4) quantum noise remediation that maps noise reachability scan results to QEC code recommendations with per-error compensating controls; and (5) quantum configuration remediation that takes a system's cryptographic configuration, applies category-specific fixes (algorithm, transport, certificate, HNDL, payment, architecture, key management), re-scans the corrected configuration to verify resolution, and reports resolved vs. remaining findings. The pipeline processes remediation requests in under 5ms for code scanning and under 2ms for noise analysis, producing actionable fix plans with severity levels, manual override flags, and post-remediation verification metrics.